| 1 | - | | 32 | Movistar Team | 17:01:40 |
| 2 | - | | 24 | Rabobank | + 09 |
| 3 | - | | 28 | Euskaltel - Euskadi | + 17 |
| 4 | - | | 28 | Colnago - CSF Inox | + 40 |
| 5 | - | | 24 | Saur - Sojasun | + 47 |
| 6 | - | | 25 | EPM - UNE | " |
| 7 | - | | 36 | Sky Procycling | + 54 |
| 8 | - | | 23 | Orbea Continental | + 58 |
| 9 | - | | 34 | Rabobank | + 59 |
| 10 | - | | 30 | Rabobank | + 01:16 |
| 11 | - | | 33 | Barbot - Efapel | " |
| 12 | - | | 27 | Colombia es Pasion - Cafe de Colombia | + 01:21 |
| 13 | - | | 23 | Rabobank | + 01:22 |
| 14 | (2) | | 25 | Sky Procycling | + 01:32 |
| 15 | (2) | | 21 | Colombia es Pasion - Cafe de Colombia | + 01:42 |
| 16 | (2) | | 30 | EPM - UNE | " |
| 17 | (2) | | 27 | Movistar Team | + 01:44 |
| 18 | - | | 27 | Colombia es Pasion - Cafe de Colombia | + 01:45 |
| 19 | - | | 23 | Colombia es Pasion - Cafe de Colombia | + 01:46 |
| 20 | - | | 26 | Saur - Sojasun | + 02:00 |
| 21 | - | | 31 | Geox - TMC | + 02:27 |
| 22 | - | | 26 | Euskaltel - Euskadi | + 02:42 |
| 23 | (1) | | 25 | Colnago - CSF Inox | + 02:47 |
| 24 | (1) | | 28 | Team Saxo Bank - SunGard | + 02:52 |
| 25 | - | | 28 | EPM - UNE | + 03:21 |
| 26 | - | | 21 | Rabobank | + 03:42 |
| 27 | - | | 24 | Caja Rural | + 04:13 |
| 28 | - | | 29 | Team Saxo Bank - SunGard | + 04:18 |
| 29 | - | | 35 | Andalucia Caja Granada | + 04:43 |
| 30 | - | | 27 | Barbot - Efapel | + 04:54 |
| 31 | - | | 28 | Colombia es Pasion - Cafe de Colombia | + 05:03 |
| 32 | (1) | | 24 | Euskaltel - Euskadi | + 05:14 |
| 33 | (1) | | 35 | Movistar Team | + 05:15 |
| 34 | (2) | | 24 | Colnago - CSF Inox | + 05:25 |
| 35 | - | | 29 | EPM - UNE | + 05:41 |
| 36 | - | | 21 | Orbea Continental | + 07:02 |
| 37 | - | | 26 | EPM - UNE | + 07:57 |
| 38 | - | | 30 | Barbot - Efapel | + 08:46 |
| 39 | - | | 21 | Orbea Continental | + 09:44 |
| 40 | - | | 36 | Colombia es Pasion - Cafe de Colombia | + 10:04 |
| 41 | - | | 28 | Colombia es Pasion - Cafe de Colombia | + 10:19 |
| 42 | (1) | | 22 | Colombia es Pasion - Cafe de Colombia | + 10:33 |
| 43 | (1) | | 29 | Andalucia Caja Granada | + 10:35 |
| 44 | - | | 25 | Caja Rural | + 11:59 |
| 45 | - | | 32 | Sky Procycling | + 12:00 |
| 46 | (1) | | 25 | Colnago - CSF Inox | + 12:09 |
| 47 | (2) | | 29 | Euskaltel - Euskadi | + 12:13 |
| 48 | (3) | | 36 | Saur - Sojasun | + 12:15 |
| 49 | (3) | | 29 | Movistar Team | + 12:20 |
| 50 | (3) | | 18 | Burgos 2016 - Castilla y Leon | + 12:28 |
| 51 | (3) | | 21 | Caja Rural | " |
| 52 | (2) | | 35 | Geox - TMC | + 12:29 |
| 53 | (1) | | 21 | Sky Procycling | + 12:44 |
| 54 | - | | 25 | Caja Rural | + 12:46 |
| 55 | (1) | | 21 | Geox - TMC | + 13:09 |
| 56 | (1) | | 23 | Burgos 2016 - Castilla y Leon | + 13:11 |
| 57 | (3) | | 25 | Andalucia Caja Granada | + 13:45 |
| 58 | (3) | | 26 | Team Saxo Bank - SunGard | + 13:47 |
| 59 | (1) | | 28 | Burgos 2016 - Castilla y Leon | + 13:51 |
| 60 | (1) | | 27 | Team Saxo Bank - SunGard | + 13:53 |
| 61 | (6) | | 29 | Saur - Sojasun | + 13:59 |
| 62 | - | | 28 | Euskaltel - Euskadi | + 14:11 |
| 63 | - | | 23 | Sky Procycling | + 16:07 |
| 64 | - | | 28 | Movistar Team | + 16:45 |
| 65 | - | | 27 | Sky Procycling | + 16:56 |
| 66 | - | | 25 | Saur - Sojasun | + 17:06 |
| 67 | - | | 26 | Barbot - Efapel | + 17:18 |
| 68 | (1) | | 34 | Barbot - Efapel | + 17:33 |
| 69 | (1) | | 25 | Barbot - Efapel | + 17:56 |
| 70 | (1) | | 24 | EPM - UNE | + 17:58 |
| 71 | (1) | | 24 | Movistar Team | + 18:34 |
| 72 | (4) | | 22 | Sky Procycling | + 18:49 |
| 73 | - | | 25 | Movistar Team | + 19:51 |
| 74 | - | | 28 | Movistar Team | + 20:11 |
| 75 | - | | 26 | Saur - Sojasun | + 20:45 |
| 76 | - | | 25 | Colnago - CSF Inox | + 24:28 |
| 77 | (1) | | 25 | Colnago - CSF Inox | + 24:31 |
| 78 | (2) | | 22 | Andalucia Caja Granada | + 24:42 |
| 79 | (2) | | 24 | Geox - TMC | " |
| 80 | (1) | | 25 | Andalucia Caja Granada | + 24:47 |
| 81 | (2) | | 34 | Team Saxo Bank - SunGard | + 24:58 |
| 82 | (2) | | 22 | Burgos 2016 - Castilla y Leon | + 25:05 |
| 83 | (2) | | 26 | Euskaltel - Euskadi | + 25:08 |
| 84 | (2) | | 25 | Barbot - Efapel | + 25:12 |
| 85 | - | | 28 | Caja Rural | " |
| 86 | - | | 25 | Caja Rural | + 25:20 |
| 87 | - | | 21 | Orbea Continental | + 25:27 |
| 88 | (1) | | 21 | Burgos 2016 - Castilla y Leon | + 25:46 |
| 89 | (1) | | 34 | Team Saxo Bank - SunGard | + 26:12 |
| 90 | (1) | | 22 | Orbea Continental | + 26:17 |
| 91 | (2) | | 22 | Burgos 2016 - Castilla y Leon | + 26:19 |
| 92 | - | | 36 | Andalucia Caja Granada | + 26:33 |
| 93 | (1) | | 23 | Colnago - CSF Inox | + 26:35 |
| 94 | (2) | | 21 | Andalucia Caja Granada | + 26:50 |
| 95 | - | | 26 | Caja Rural | + 26:58 |
| 96 | (2) | | 33 | Andalucia Caja Granada | + 27:34 |
| 97 | (3) | | 32 | Team Saxo Bank - SunGard | + 28:11 |
| 98 | (1) | | 21 | Colnago - CSF Inox | + 28:43 |
| 99 | (3) | | 29 | Geox - TMC | + 29:06 |
| 100 | (1) | | 22 | Orbea Continental | + 29:21 |
| 101 | (2) | | 25 | Saur - Sojasun | + 29:25 |
| 102 | (2) | | 27 | Rabobank | + 29:27 |
| 103 | (2) | | 22 | Geox - TMC | + 30:01 |
| 104 | (2) | | 26 | Euskaltel - Euskadi | + 30:27 |
| 105 | (2) | | 23 | Barbot - Efapel | + 31:08 |
| 106 | (2) | | 23 | Burgos 2016 - Castilla y Leon | + 32:11 |
| 107 | (2) | | 32 | Rabobank | + 32:43 |