| 1 | (18) | | 24 | Rabobank | 13:17:52 |
| 2 | (24) | | 32 | Movistar Team | + 03 |
| 3 | (26) | | 28 | Euskaltel - Euskadi | " |
| 4 | (50) | | 28 | Colnago - CSF Inox | + 06 |
| 5 | (38) | | 36 | Sky Procycling | + 14 |
| 6 | (18) | | 27 | Colombia es Pasion - Cafe de Colombia | + 17 |
| 7 | (3) | | 33 | Barbot - Efapel | + 21 |
| 8 | (13) | | 24 | Saur - Sojasun | " |
| 9 | (16) | | 23 | Orbea Continental | " |
| 10 | (26) | | 27 | Movistar Team | + 27 |
| 11 | (31) | | 23 | Colombia es Pasion - Cafe de Colombia | " |
| 12 | (27) | | 23 | Rabobank | " |
| 13 | (35) | | 34 | Rabobank | " |
| 14 | (37) | | 25 | EPM - UNE | " |
| 15 | (44) | | 27 | Colombia es Pasion - Cafe de Colombia | " |
| 16 | (55) | | 30 | EPM - UNE | " |
| 17 | (20) | | 30 | Rabobank | + 37 |
| 18 | (62) | | 25 | Sky Procycling | + 01:00 |
| 19 | (21) | | 26 | Euskaltel - Euskadi | + 01:01 |
| 20 | (29) | | 21 | Colombia es Pasion - Cafe de Colombia | + 01:04 |
| 21 | (44) | | 31 | Geox - TMC | " |
| 22 | (44) | | 26 | Saur - Sojasun | " |
| 23 | (52) | | 28 | EPM - UNE | + 01:09 |
| 24 | (70) | | 25 | Colnago - CSF Inox | + 01:35 |
| 25 | (65) | | 21 | Rabobank | + 02:23 |
| 26 | (17) | | 28 | Team Saxo Bank - SunGard | + 02:43 |
| 27 | (51) | | 29 | Team Saxo Bank - SunGard | + 02:49 |
| 28 | (18) | | 28 | Colombia es Pasion - Cafe de Colombia | + 03:10 |
| 29 | (68) | | 24 | Caja Rural | + 03:21 |
| 30 | (18) | | 24 | Euskaltel - Euskadi | + 03:28 |
| 31 | (24) | | 35 | Andalucia Caja Granada | + 03:34 |
| 32 | (21) | | 35 | Movistar Team | + 04:07 |
| 33 | (16) | | 29 | EPM - UNE | " |
| 34 | (11) | | 27 | Barbot - Efapel | " |
| 35 | (12) | | 24 | Colnago - CSF Inox | + 04:13 |
| 36 | (71) | | 21 | Orbea Continental | + 06:08 |
| 37 | (22) | | 30 | Barbot - Efapel | + 06:36 |
| 38 | (34) | | 26 | EPM - UNE | + 07:17 |
| 39 | (61) | | 21 | Orbea Continental | + 07:20 |
| 40 | (22) | | 29 | Andalucia Caja Granada | + 09:05 |
| 41 | (28) | | 36 | Colombia es Pasion - Cafe de Colombia | + 09:11 |
| 42 | (32) | | 28 | Colombia es Pasion - Cafe de Colombia | " |
| 43 | (30) | | 22 | Colombia es Pasion - Cafe de Colombia | + 09:46 |
| 44 | (42) | | 32 | Sky Procycling | + 11:16 |
| 45 | (41) | | 29 | Euskaltel - Euskadi | " |
| 46 | (38) | | 25 | Caja Rural | " |
| 47 | (31) | | 25 | Colnago - CSF Inox | " |
| 48 | (18) | | 36 | Saur - Sojasun | " |
| 49 | (8) | | 29 | Saur - Sojasun | + 11:22 |
| 50 | (12) | | 21 | Sky Procycling | " |
| 51 | (6) | | 25 | Andalucia Caja Granada | " |
| 52 | (1) | | 28 | Burgos 2016 - Castilla y Leon | " |
| 53 | (5) | | 25 | Caja Rural | " |
| 54 | (9) | | 29 | Movistar Team | " |
| 55 | (5) | | 21 | Geox - TMC | " |
| 56 | (6) | | 18 | Burgos 2016 - Castilla y Leon | " |
| 57 | (7) | | 23 | Burgos 2016 - Castilla y Leon | " |
| 58 | (3) | | 21 | Caja Rural | " |
| 59 | (14) | | 35 | Geox - TMC | " |
| 60 | (29) | | 28 | Euskaltel - Euskadi | + 12:56 |
| 61 | (32) | | 27 | Team Saxo Bank - SunGard | " |
| 62 | (5) | | 26 | Team Saxo Bank - SunGard | + 13:52 |
| 63 | (40) | | 23 | Sky Procycling | + 14:20 |
| 64 | (63) | | 28 | Movistar Team | + 15:39 |
| 65 | (51) | | 26 | Barbot - Efapel | " |
| 66 | (31) | | 24 | EPM - UNE | + 15:45 |
| 67 | (23) | | 27 | Sky Procycling | " |
| 68 | (12) | | 25 | Saur - Sojasun | " |
| 69 | (2) | | 34 | Barbot - Efapel | " |
| 70 | (11) | | 25 | Barbot - Efapel | + 16:26 |
| 71 | (14) | | 22 | Sky Procycling | + 17:07 |
| 72 | (19) | | 24 | Movistar Team | + 17:19 |
| 73 | (26) | | 25 | Orbea Continental | + 18:00 |
| 74 | (31) | | 28 | Movistar Team | + 18:43 |
| 75 | (31) | | 25 | Movistar Team | + 18:51 |
| 76 | (69) | | 26 | Saur - Sojasun | + 20:05 |
| 77 | - | | 25 | Colnago - CSF Inox | + 23:13 |
| 78 | (72) | | 28 | Caja Rural | " |
| 79 | (59) | | 25 | Barbot - Efapel | " |
| 80 | (53) | | 22 | Andalucia Caja Granada | " |
| 81 | (50) | | 26 | Euskaltel - Euskadi | " |
| 82 | (49) | | 22 | Burgos 2016 - Castilla y Leon | " |
| 83 | (33) | | 25 | Andalucia Caja Granada | + 23:19 |
| 84 | (8) | | 24 | Geox - TMC | " |
| 85 | (17) | | 25 | Colnago - CSF Inox | " |
| 86 | (7) | | 25 | Caja Rural | + 23:30 |
| 87 | (82) | | 34 | Team Saxo Bank - SunGard | + 24:14 |
| 88 | (56) | | 22 | Orbea Continental | " |
| 89 | (55) | | 21 | Orbea Continental | " |
| 90 | (68) | | 22 | Geox - TMC | + 24:18 |
| 91 | (7) | | 21 | Andalucia Caja Granada | + 24:27 |
| 92 | (5) | | 34 | Team Saxo Bank - SunGard | + 24:51 |
| 93 | (7) | | 23 | Colnago - CSF Inox | " |
| 94 | (6) | | 22 | Burgos 2016 - Castilla y Leon | + 24:53 |
| 95 | (3) | | 36 | Andalucia Caja Granada | " |
| 96 | (14) | | 21 | Burgos 2016 - Castilla y Leon | + 25:02 |
| 97 | (2) | | 26 | Caja Rural | + 25:11 |
| 98 | (2) | | 33 | Andalucia Caja Granada | + 25:19 |
| 99 | (16) | | 31 | Caja Rural | + 25:33 |
| 100 | (1) | | 21 | Colnago - CSF Inox | + 26:15 |
| 101 | (3) | | 32 | Team Saxo Bank - SunGard | + 26:20 |
| 102 | (6) | | 22 | Orbea Continental | + 26:53 |
| 103 | (6) | | 27 | Rabobank | + 27:03 |
| 104 | (6) | | 29 | Geox - TMC | + 27:25 |
| 105 | (3) | | 22 | Geox - TMC | + 27:45 |
| 106 | (5) | | 25 | Saur - Sojasun | + 27:49 |
| 107 | (5) | | 23 | Barbot - Efapel | + 28:17 |
| 108 | (6) | | 26 | Euskaltel - Euskadi | + 29:09 |
| 109 | (4) | | 23 | Burgos 2016 - Castilla y Leon | + 30:07 |
| 110 | (6) | | 32 | Rabobank | + 30:50 |