| 1 | | 33 | Euskaltel - Euskadi | 03:51:07 |
| 2 | | 32 | Katusha Team | " |
| 3 | | 27 | Movistar Team | + 04 |
| 4 | | 33 | Geox - TMC | " |
| 5 | | 30 | Movistar Team | " |
| 6 | | 35 | Movistar Team | + 08 |
| 7 | | 30 | Geox - TMC | " |
| 8 | | 36 | Geox - TMC | " |
| 9 | | 26 | Saur - Sojasun | + 10 |
| 10 | | 23 | Orbea Continental | + 12 |
| 11 | | 28 | Euskaltel - Euskadi | " |
| 12 | | 27 | Euskaltel - Euskadi | + 14 |
| 13 | | 25 | Colombia es Pasion - Cafe de Colombia | " |
| 14 | | 24 | Geox - TMC | + 19 |
| 15 | | 30 | Saur - Sojasun | + 20 |
| 16 | | 25 | Topsport Vlaanderen - Mercator | " |
| 17 | | 29 | Movistar Team | " |
| 18 | | 25 | Andalucia Caja Granada | + 23 |
| 19 | | 32 | Geox - TMC | " |
| 20 | | 26 | FDJ | + 25 |
| 21 | | 31 | Androni Giocattoli | + 26 |
| 22 | | 25 | Saur - Sojasun | " |
| 23 | | 29 | Colombia es Pasion - Cafe de Colombia | " |
| 24 | | 29 | Katusha Team | + 29 |
| 25 | | 30 | Geox - TMC | + 33 |
| 26 | | 21 | Geox - TMC | " |
| 27 | | 22 | Topsport Vlaanderen - Mercator | " |
| 28 | | 29 | Andalucia Caja Granada | " |
| 29 | | 25 | Movistar Team | + 36 |
| 30 | | 31 | Movistar Team | + 38 |
| 31 | | 24 | Acqua & Sapone | " |
| 32 | | 22 | Skil - Shimano | " |
| 33 | | 23 | Colombia es Pasion - Cafe de Colombia | " |
| 34 | | 20 | FDJ | " |
| 35 | | 29 | Katusha Team | " |
| 36 | | 23 | Katusha Team | " |
| 37 | | 28 | Katusha Team | " |
| 38 | | 38 | Acqua & Sapone | " |
| 39 | | 29 | Andalucia Caja Granada | + 46 |
| 40 | | 42 | Caja Rural | " |
| 41 | | 30 | Katusha Team | + 48 |
| 42 | | 21 | Androni Giocattoli | + 50 |
| 43 | | 29 | Acqua & Sapone | " |
| 44 | | 21 | Movistar Team | " |
| 45 | | 25 | Caja Rural | + 52 |
| 46 | | 21 | Burgos 2016 - Castilla y Leon | " |
| 47 | | 24 | Topsport Vlaanderen - Mercator | " |
| 48 | | 22 | Colombia es Pasion - Cafe de Colombia | + 54 |
| 49 | | 25 | Topsport Vlaanderen - Mercator | " |
| 50 | | 29 | Topsport Vlaanderen - Mercator | " |
| 51 | | 32 | Topsport Vlaanderen - Mercator | " |
| 52 | | 27 | Skil - Shimano | " |
| 53 | | 25 | Saur - Sojasun | " |
| 54 | | 20 | Skil - Shimano | " |
| 55 | | 20 | Burgos 2016 - Castilla y Leon | " |
| 56 | | 27 | Caja Rural | " |
| 57 | | 22 | Orbea Continental | " |
| 58 | | 23 | Orbea Continental | + 59 |
| 59 | | 21 | Euskaltel - Euskadi | " |
| 60 | | 35 | Andalucia Caja Granada | " |
| 61 | | 28 | Colombia es Pasion - Cafe de Colombia | " |
| 62 | | 23 | Androni Giocattoli | + 01:03 |
| 63 | | 28 | Burgos 2016 - Castilla y Leon | + 01:07 |
| 64 | | 26 | FDJ | + 01:12 |
| 65 | | 22 | Burgos 2016 - Castilla y Leon | + 01:14 |
| 66 | | 31 | Euskaltel - Euskadi | + 01:18 |
| 67 | | 37 | Katusha Team | + 01:22 |
| 68 | | 33 | Andalucia Caja Granada | " |
| 69 | | 21 | Androni Giocattoli | " |
| 70 | | 21 | Geox - TMC | + 01:24 |
| 71 | | 26 | Saur - Sojasun | " |
| 72 | | 21 | Orbea Continental | " |
| 73 | | 38 | Acqua & Sapone | " |
| 74 | | 37 | Colombia es Pasion - Cafe de Colombia | " |
| 75 | | 37 | Acqua & Sapone | " |
| 76 | | 28 | Colombia es Pasion - Cafe de Colombia | " |
| 77 | | 21 | Saur - Sojasun | " |
| 78 | | 32 | Colombia es Pasion - Cafe de Colombia | " |
| 79 | | 21 | Euskaltel - Euskadi | + 01:31 |
| 80 | | 25 | Andalucia Caja Granada | + 01:33 |
| 81 | | 26 | Androni Giocattoli | + 01:51 |
| 82 | | 22 | Burgos 2016 - Castilla y Leon | + 01:53 |
| 83 | | 21 | Andalucia Caja Granada | + 02:05 |
| 84 | | 25 | Caja Rural | + 02:10 |
| 85 | | 24 | Caja Rural | + 02:21 |
| 86 | | 27 | Skil - Shimano | + 02:29 |
| 87 | | 30 | Saur - Sojasun | " |
| 88 | | 31 | Euskaltel - Euskadi | " |
| 89 | | 28 | FDJ | " |
| 90 | | 34 | Androni Giocattoli | " |
| 91 | | 20 | Caja Rural | " |
| 92 | | 22 | Skil - Shimano | " |
| 93 | | 39 | FDJ | " |
| 94 | | 34 | Euskaltel - Euskadi | " |
| 95 | | 21 | Orbea Continental | " |
| 96 | | 25 | Orbea Continental | " |
| 97 | | 32 | Acqua & Sapone | " |
| 98 | | 25 | Caja Rural | + 02:40 |
| 99 | | 31 | Katusha Team | + 03:09 |
| 100 | | 28 | Acqua & Sapone | + 03:10 |
| 101 | | 38 | Movistar Team | + 03:18 |
| 102 | | 18 | Burgos 2016 - Castilla y Leon | " |
| 103 | | 23 | Burgos 2016 - Castilla y Leon | " |
| 104 | | 23 | Orbea Continental | + 03:20 |
| 105 | | 22 | Andalucia Caja Granada | + 03:21 |
| 106 | | 24 | Skil - Shimano | " |
| 107 | | 27 | Saur - Sojasun | + 03:24 |
| 108 | | 23 | Skil - Shimano | + 03:40 |
| 109 | | 22 | Caja Rural | + 03:41 |
| 110 | | 27 | FDJ | + 04:09 |
| 111 | | 26 | Skil - Shimano | + 04:11 |
| 112 | | 24 | FDJ | + 04:13 |
| 113 | | 22 | Topsport Vlaanderen - Mercator | " |
| 114 | | 26 | Topsport Vlaanderen - Mercator | " |
| 115 | | 22 | Orbea Continental | + 04:16 |
| 116 | | 40 | Androni Giocattoli | + 04:20 |
| 117 | | 30 | Acqua & Sapone | + 04:43 |
| 118 | | 30 | Androni Giocattoli | " |
| 119 | | 32 | Burgos 2016 - Castilla y Leon | + 13:18 |