| 1 | - | | 33 | Astana | 77:42:17 |
| 2 | - | | 26 | Caisse d'Epargne - Illes Balears | + 01:12 |
| 3 | - | | 26 | Astana | + 03:12 |
| 4 | - | | 31 | Team CSC | + 03:35 |
| 5 | - | | 26 | Saunier Duval - Prodir | + 06:51 |
| 6 | - | | 28 | Discovery Channel | + 08:09 |
| 7 | - | | 28 | Euskaltel - Euskadi | + 08:29 |
| 8 | (2) | | 25 | Caisse d'Epargne - Illes Balears | + 10:36 |
| 9 | (1) | | 35 | Discovery Channel | + 10:47 |
| 10 | (1) | | 32 | Cofidis | + 11:32 |
| 11 | - | | 27 | Discovery Channel | + 12:52 |
| 12 | - | | 28 | Discovery Channel | + 15:10 |
| 13 | - | | 34 | Saunier Duval - Prodir | + 17:23 |
| 14 | - | | 28 | Lampre - Fondital | + 18:40 |
| 15 | - | | 23 | Euskaltel - Euskadi | + 18:56 |
| 16 | - | | 26 | Astana | + 19:44 |
| 17 | - | | 27 | Caisse d'Epargne - Illes Balears | + 24:00 |
| 18 | (1) | | 28 | Lampre - Fondital | + 27:51 |
| 19 | (1) | | 26 | Caisse d'Epargne - Illes Balears | + 28:04 |
| 20 | - | | 34 | Davitamon-Lotto | + 29:04 |
| 21 | - | | 26 | Team CSC | + 30:36 |
| 22 | - | | 29 | Caisse d'Epargne - Illes Balears | + 32:09 |
| 23 | - | | 24 | Discovery Channel | + 34:48 |
| 24 | - | | 24 | Rabobank | + 42:46 |
| 25 | - | | 29 | Relax - GAM | + 43:22 |
| 26 | - | | 33 | Ag2r Prevoyance | + 45:03 |
| 27 | (1) | | 37 | Team CSC | + 46:21 |
| 28 | (1) | | 31 | Team CSC | + 46:30 |
| 29 | (1) | | 36 | Ag2r Prevoyance | + 50:47 |
| 30 | (2) | | 22 | Discovery Channel | + 50:49 |
| 31 | (2) | | 30 | Astana | + 50:50 |
| 32 | (1) | | 30 | Crédit Agricole | + 51:57 |
| 33 | - | | 28 | Française des Jeux | + 55:09 |
| 34 | (1) | | 29 | Euskaltel - Euskadi | + 56:12 |
| 35 | (1) | | 29 | Euskaltel - Euskadi | + 56:48 |
| 36 | - | | 31 | Crédit Agricole | + 01:01:55 |
| 37 | - | | 25 | Relax - GAM | + 01:02:32 |
| 38 | - | | 31 | Liquigas | + 01:04:33 |
| 39 | - | | 25 | Discovery Channel | + 01:06:40 |
| 40 | - | | 25 | Ag2r Prevoyance | + 01:08:18 |
| 41 | - | | 34 | Cofidis | + 01:14:34 |
| 42 | - | | 25 | Astana | + 01:16:47 |
| 43 | - | | 24 | Cofidis | + 01:19:25 |
| 44 | - | | 35 | Ag2r Prevoyance | + 01:24:11 |
| 45 | - | | 33 | Cofidis | + 01:25:18 |
| 46 | (1) | | 31 | Team CSC | + 01:29:06 |
| 47 | (1) | | 21 | Astana | + 01:29:48 |
| 48 | - | | 30 | Caisse d'Epargne - Illes Balears | + 01:30:27 |
| 49 | (1) | | 29 | Caisse d'Epargne - Illes Balears | + 01:30:54 |
| 50 | (1) | | 34 | Team T-Mobile | + 01:30:58 |
| 51 | - | | 24 | Relax - GAM | + 01:35:57 |
| 52 | - | | 25 | Euskaltel - Euskadi | + 01:37:01 |
| 53 | (1) | | 31 | Team CSC | + 01:37:05 |
| 54 | (1) | | 29 | Team CSC | + 01:37:59 |
| 55 | (2) | | 30 | Crédit Agricole | + 01:38:21 |
| 56 | - | | 26 | Ag2r Prevoyance | + 01:39:33 |
| 57 | (3) | | 26 | Gerolsteiner | + 01:40:01 |
| 58 | (1) | | 25 | Relax - GAM | + 01:40:06 |
| 59 | (1) | | 30 | Quick Step - Innergetic | + 01:41:37 |
| 60 | (1) | | 29 | Euskaltel - Euskadi | + 01:41:45 |
| 61 | - | | 25 | Rabobank | + 01:43:19 |
| 62 | - | | 36 | Team Milram | + 01:45:23 |
| 63 | - | | 26 | Lampre - Fondital | + 01:45:53 |
| 64 | (3) | | 29 | Saunier Duval - Prodir | + 01:45:54 |
| 65 | (3) | | 33 | Team CSC | + 01:45:58 |
| 66 | - | | 30 | Discovery Channel | + 01:46:03 |
| 67 | (3) | | 27 | Rabobank | + 01:47:15 |
| 68 | (3) | | 27 | Française des Jeux | + 01:47:34 |
| 69 | (1) | | 24 | Euskaltel - Euskadi | + 01:49:24 |
| 70 | (1) | | 30 | Relax - GAM | + 01:50:05 |
| 71 | - | | 25 | Saunier Duval - Prodir | + 01:50:42 |
| 72 | - | | 30 | Rabobank | + 01:51:49 |
| 73 | (1) | | 24 | Quick Step - Innergetic | + 01:52:23 |
| 74 | (1) | | 24 | Phonak Hearing Systems | + 01:52:53 |
| 75 | - | | 26 | Davitamon-Lotto | + 01:58:08 |
| 76 | (2) | | 29 | Crédit Agricole | + 01:59:57 |
| 77 | (2) | | 30 | Discovery Channel | + 02:02:32 |
| 78 | (1) | | 24 | Saunier Duval - Prodir | + 02:03:02 |
| 79 | (1) | | 32 | Caisse d'Epargne - Illes Balears | + 02:03:10 |
| 80 | (4) | | 26 | Cofidis | + 02:04:14 |
| 81 | (1) | | 28 | Team T-Mobile | + 02:05:03 |
| 82 | (1) | | 28 | Crédit Agricole | + 02:05:24 |
| 83 | - | | 34 | Bouygues Telecom | + 02:09:07 |
| 84 | (1) | | 23 | Phonak Hearing Systems | + 02:09:29 |
| 85 | (1) | | 33 | Cofidis | + 02:09:37 |
| 86 | - | | 27 | Cofidis | + 02:09:56 |
| 87 | - | | 26 | Relax - GAM | + 02:10:12 |
| 88 | - | | 31 | Saunier Duval - Prodir | + 02:14:29 |
| 89 | - | | 29 | Ag2r Prevoyance | + 02:16:03 |
| 90 | - | | 26 | Phonak Hearing Systems | + 02:16:33 |
| 91 | - | | 27 | Team T-Mobile | + 02:17:12 |
| 92 | (2) | | 22 | Gerolsteiner | + 02:20:53 |
| 93 | - | | 29 | Davitamon-Lotto | + 02:20:58 |
| 94 | (2) | | 26 | Euskaltel - Euskadi | + 02:22:35 |
| 95 | - | | 28 | Quick Step - Innergetic | + 02:22:46 |
| 96 | (3) | | 32 | Team Milram | + 02:26:23 |
| 97 | - | | 24 | Lampre - Fondital | + 02:26:41 |
| 98 | - | | 25 | Astana | + 02:27:45 |
| 99 | (3) | | 31 | Liquigas | + 02:29:54 |
| 100 | - | | 25 | Française des Jeux | + 02:30:12 |
| 101 | - | | 24 | Saunier Duval - Prodir | + 02:30:28 |
| 102 | (2) | | 26 | Relax - GAM | + 02:31:27 |
| 103 | - | | 25 | Cofidis | + 02:32:05 |
| 104 | (1) | | 34 | Caisse d'Epargne - Illes Balears | + 02:35:19 |
| 105 | (1) | | 29 | Ag2r Prevoyance | + 02:35:38 |
| 106 | (2) | | 31 | Rabobank | + 02:36:24 |
| 107 | - | | 23 | Lampre - Fondital | + 02:36:46 |
| 108 | (1) | | 24 | Bouygues Telecom | + 02:37:40 |
| 109 | (1) | | 33 | Davitamon-Lotto | + 02:38:43 |
| 110 | (3) | | 23 | Davitamon-Lotto | + 02:39:11 |
| 111 | (5) | | 31 | Liquigas | + 02:41:09 |
| 112 | (1) | | 20 | Rabobank | + 02:41:17 |
| 113 | (1) | | 31 | Phonak Hearing Systems | + 02:41:52 |
| 114 | (1) | | 33 | Liquigas | + 02:41:59 |
| 115 | (5) | | 25 | Quick Step - Innergetic | + 02:42:12 |
| 116 | (2) | | 27 | Phonak Hearing Systems | + 02:42:26 |
| 117 | - | | 22 | Quick Step - Innergetic | + 02:42:54 |
| 118 | - | | 32 | Team Milram | + 02:43:40 |
| 119 | (2) | | 23 | Astana | + 02:44:54 |
| 120 | (3) | | 29 | Liquigas | + 02:45:40 |
| 121 | (2) | | 32 | Bouygues Telecom | + 02:45:45 |
| 122 | - | | 23 | Française des Jeux | + 02:45:48 |
| 123 | (2) | | 29 | Quick Step - Innergetic | + 02:46:59 |
| 124 | - | | 22 | Liquigas | + 02:47:04 |
| 125 | (1) | | 23 | Team T-Mobile | + 02:48:44 |
| 126 | (1) | | 32 | Ag2r Prevoyance | + 02:52:29 |
| 127 | (1) | | 28 | Team Milram | + 02:55:39 |
| 128 | (4) | | 25 | Quick Step - Innergetic | + 02:57:40 |
| 129 | - | | 23 | Française des Jeux | + 02:57:54 |
| 130 | - | | 28 | Gerolsteiner | + 02:58:27 |
| 131 | - | | 31 | Team Milram | + 02:59:32 |
| 132 | (1) | | 29 | Crédit Agricole | + 03:10:10 |
| 133 | (2) | | 23 | Crédit Agricole | + 03:19:47 |
| 134 | - | | 37 | Team Milram | + 03:19:52 |