| 1 | (5) | | 26 | Caja Rural | 12:23:17 |
| 2 | (3) | | 32 | Miche | + 13 |
| 3 | (13) | | 27 | Barbot - Efapel | + 36 |
| 4 | (3) | | 29 | LA - Antarte | + 47 |
| 5 | (1) | | 31 | Movistar Team | + 01:40 |
| 6 | (20) | | 25 | EPM - UNE | + 01:46 |
| 7 | (4) | | 25 | Caja Rural | + 02:17 |
| 8 | (17) | | 26 | UnitedHealthcare Pro Cycling | + 03:54 |
| 9 | (5) | | 30 | EPM - UNE | + 04:00 |
| 10 | (9) | | 29 | Miche | + 04:07 |
| 11 | (1) | | 23 | Euskaltel - Euskadi | + 04:33 |
| 12 | (31) | | 28 | EPM - UNE | + 04:37 |
| 13 | (5) | | 29 | Onda | + 04:44 |
| 14 | (3) | | 33 | Barbot - Efapel | + 04:49 |
| 15 | (3) | | 25 | Barbot - Efapel | + 05:06 |
| 16 | (24) | | 19 | | + 07:33 |
| 17 | (5) | | 26 | EPM - UNE | + 07:49 |
| 18 | (2) | | 29 | EPM - UNE | + 08:28 |
| 19 | (2) | | 23 | Onda | + 08:52 |
| 20 | (25) | | 25 | Andalucia Caja Granada | + 09:02 |
| 21 | (43) | | 24 | Caja Rural | + 10:16 |
| 22 | (2) | | 30 | Miche | + 10:57 |
| 23 | (36) | | 21 | | + 11:56 |
| 24 | (3) | | 22 | | + 12:13 |
| 25 | (51) | | 29 | Movistar Team | + 12:51 |
| 26 | (2) | | 24 | KTM - Murcia | + 12:58 |
| 27 | (21) | | 31 | UnitedHealthcare Pro Cycling | + 13:10 |
| 28 | (14) | | 27 | Movistar Team | + 13:26 |
| 29 | (15) | | 29 | Euskaltel - Euskadi | + 13:35 |
| 30 | (8) | | 23 | Orbea Continental | + 14:00 |
| 31 | (29) | | 29 | UnitedHealthcare Pro Cycling | + 14:18 |
| 32 | (43) | | 24 | Movistar Team | + 14:28 |
| 33 | (10) | | 30 | EPM - UNE | + 15:15 |
| 34 | (19) | | 19 | | + 15:21 |
| 35 | (15) | | 28 | Onda | + 17:14 |
| 36 | (6) | | 31 | LA - Antarte | + 17:39 |
| 37 | (26) | | 32 | Movistar Team | + 19:01 |
| 38 | (25) | | 23 | | + 19:02 |
| 39 | (43) | | 25 | Barbot - Efapel | + 20:43 |
| 40 | (1) | | 21 | | + 21:00 |
| 41 | (10) | | 24 | Barbot - Efapel | + 21:45 |
| 42 | (5) | | 25 | Onda | + 21:51 |
| 43 | (36) | | 25 | Orbea Continental | + 21:54 |
| 44 | (7) | | 24 | Euskaltel - Euskadi | + 22:46 |
| 45 | (30) | | 36 | Geox - TMC | + 23:10 |
| 46 | (23) | | 34 | Barbot - Efapel | + 23:42 |
| 47 | (20) | | 29 | Geox - TMC | + 23:51 |
| 48 | (15) | | 25 | LA - Antarte | + 24:25 |
| 49 | (12) | | 20 | Andalucia Caja Granada | + 25:28 |
| 50 | (1) | | 30 | Barbot - Efapel | + 25:53 |
| 51 | (33) | | 22 | | + 26:03 |
| 52 | (21) | | 22 | Caja Rural | + 26:48 |
| 53 | (19) | | 31 | Caja Rural | + 26:51 |
| 54 | (45) | | 28 | Burgos 2016 - Castilla y Leon | " |
| 55 | (1) | | 34 | LA - Antarte | + 26:53 |
| 56 | - | | 29 | LA - Antarte | + 27:15 |
| 57 | (25) | | 21 | Geox - TMC | + 28:29 |
| 58 | (3) | | 20 | Burgos 2016 - Castilla y Leon | + 28:34 |
| 59 | (3) | | 22 | LA - Antarte | + 28:45 |
| 60 | (5) | | 21 | | + 28:57 |
| 61 | (17) | | 32 | Movistar Team | + 29:18 |
| 62 | (10) | | 20 | | + 30:20 |
| 63 | (5) | | 41 | Caja Rural | + 30:29 |
| 64 | (18) | | 21 | Orbea Continental | + 31:24 |
| 65 | (8) | | 29 | Andalucia Caja Granada | + 31:55 |
| 66 | (2) | | 26 | Euskaltel - Euskadi | + 32:27 |
| 67 | (3) | | 45 | | + 33:46 |
| 68 | (2) | | 31 | Euskaltel - Euskadi | + 34:13 |
| 69 | (2) | | 23 | Andalucia Caja Granada | + 37:05 |
| 70 | (61) | | 33 | UnitedHealthcare Pro Cycling | + 40:28 |
| 71 | (29) | | 26 | UnitedHealthcare Pro Cycling | + 41:39 |
| 72 | (36) | | 25 | Andalucia Caja Granada | + 42:21 |
| 73 | (6) | | 26 | Barbot - Efapel | + 43:37 |
| 74 | (31) | | 32 | UnitedHealthcare Pro Cycling | + 43:39 |
| 75 | (23) | | 34 | Onda | + 43:43 |
| 76 | (21) | | 25 | Onda | + 44:30 |
| 77 | (30) | | | | + 44:55 |
| 78 | (30) | | 21 | Orbea Continental | + 45:18 |
| 79 | (19) | | 29 | Andalucia Caja Granada | + 46:03 |
| 80 | (9) | | 24 | Miche | + 46:07 |
| 81 | (22) | | 23 | Orbea Continental | + 46:24 |
| 82 | (15) | | 21 | Orbea Continental | + 46:46 |
| 83 | (4) | | 19 | | + 49:26 |
| 84 | (4) | | 29 | Miche | + 49:37 |
| 85 | (11) | | 31 | Miche | + 50:10 |
| 86 | (6) | | 25 | LA - Antarte | + 51:08 |
| 87 | (4) | | 28 | Onda | + 51:35 |
| 88 | (3) | | 30 | EPM - UNE | + 53:17 |
| 89 | (3) | | 24 | EPM - UNE | + 53:45 |
| 90 | (5) | | 27 | LA - Antarte | + 54:27 |
| 91 | (1) | | 33 | Andalucia Caja Granada | + 56:07 |
| 92 | (1) | | 23 | Onda | + 57:29 |
| 93 | (16) | | 23 | | + 58:02 |
| 94 | (2) | | 29 | | + 58:13 |
| 95 | (1) | | 33 | UnitedHealthcare Pro Cycling | + 58:14 |
| 96 | (2) | | | | + 58:27 |
| 97 | (4) | | 33 | Miche | + 01:00:01 |
| 98 | (4) | | 21 | Orbea Continental | + 01:00:17 |
| 99 | (5) | | 28 | Caja Rural | + 01:00:52 |
| 100 | (10) | | 23 | Burgos 2016 - Castilla y Leon | + 01:02:15 |
| 101 | (10) | | 31 | Burgos 2016 - Castilla y Leon | + 01:02:31 |
| 102 | (10) | | 26 | Caja Rural | + 01:02:37 |