| 1 | | 29 | Miche | 17:27:00 |
| 2 | | 32 | Movistar Team | + 04 |
| 3 | | 29 | UnitedHealthcare Pro Cycling | + 08 |
| 4 | | 23 | | + 09 |
| 5 | | 25 | Caja Rural | + 14 |
| 6 | | 31 | Movistar Team | + 19 |
| 7 | | 31 | LA - Antarte | + 23 |
| 8 | | 26 | Caja Rural | + 29 |
| 9 | | 32 | Miche | " |
| 10 | | 29 | LA - Antarte | + 32 |
| 11 | | 29 | Onda | " |
| 12 | | 33 | UnitedHealthcare Pro Cycling | + 39 |
| 13 | | 23 | Euskaltel - Euskadi | + 40 |
| 14 | | 26 | EPM - UNE | + 41 |
| 15 | | 33 | Barbot - Efapel | " |
| 16 | | 24 | Caja Rural | " |
| 17 | | 21 | Geox - TMC | + 44 |
| 18 | | 19 | | " |
| 19 | | 24 | Movistar Team | " |
| 20 | | 30 | EPM - UNE | + 47 |
| 21 | | 23 | Orbea Continental | + 48 |
| 22 | | 27 | Movistar Team | + 50 |
| 23 | | 36 | Geox - TMC | + 52 |
| 24 | | 27 | Barbot - Efapel | + 53 |
| 25 | | 29 | Movistar Team | " |
| 26 | | 26 | UnitedHealthcare Pro Cycling | " |
| 27 | | 19 | | + 56 |
| 28 | | 41 | Caja Rural | + 58 |
| 29 | | 21 | | " |
| 30 | | 25 | Barbot - Efapel | + 01:00 |
| 31 | | 23 | Onda | + 01:01 |
| 32 | | 21 | | + 01:05 |
| 33 | | 21 | Orbea Continental | + 01:06 |
| 34 | | 30 | Euskaltel - Euskadi | " |
| 35 | | 25 | Andalucia Caja Granada | + 01:09 |
| 36 | | 20 | Andalucia Caja Granada | + 01:13 |
| 37 | | 33 | Miche | " |
| 38 | | 34 | Euskaltel - Euskadi | + 01:14 |
| 39 | | 21 | | + 01:16 |
| 40 | | 31 | Euskaltel - Euskadi | + 01:17 |
| 41 | | 29 | EPM - UNE | + 01:20 |
| 42 | | 19 | | " |
| 43 | | 22 | | + 01:21 |
| 44 | | 22 | | " |
| 45 | | 21 | Burgos 2016 - Castilla y Leon | + 01:22 |
| 46 | | 21 | Orbea Continental | " |
| 47 | | 23 | Onda | + 01:23 |
| 48 | | 30 | Geox - TMC | " |
| 49 | | 32 | Movistar Team | + 01:24 |
| 50 | | 20 | Burgos 2016 - Castilla y Leon | " |
| 51 | | 30 | EPM - UNE | + 01:26 |
| 52 | | 26 | Barbot - Efapel | + 01:28 |
| 53 | | 30 | Miche | " |
| 54 | | 26 | Euskaltel - Euskadi | " |
| 55 | | 24 | Barbot - Efapel | + 01:30 |
| 56 | | 25 | LA - Antarte | + 01:31 |
| 57 | | 25 | EPM - UNE | " |
| 58 | | 29 | Andalucia Caja Granada | + 01:32 |
| 59 | | 29 | Euskaltel - Euskadi | + 01:33 |
| 60 | | 29 | Miche | + 01:34 |
| 61 | | 24 | KTM - Murcia | " |
| 62 | | 22 | LA - Antarte | + 01:35 |
| 63 | | 25 | Orbea Continental | " |
| 64 | | 34 | Barbot - Efapel | + 01:36 |
| 65 | | 25 | Andalucia Caja Granada | + 01:37 |
| 66 | | 29 | Geox - TMC | " |
| 67 | | 30 | EPM - UNE | + 01:38 |
| 68 | | 28 | Onda | + 01:44 |
| 69 | | 45 | | + 01:46 |
| 70 | | 23 | Miche | + 01:47 |
| 71 | | 25 | Onda | + 01:51 |
| 72 | | 24 | Geox - TMC | + 01:55 |
| 73 | | 34 | Onda | + 01:56 |
| 74 | | 24 | Miche | " |
| 75 | | 23 | Orbea Continental | + 01:57 |
| 76 | | 23 | Andalucia Caja Granada | + 02:00 |
| 77 | | 23 | Burgos 2016 - Castilla y Leon | + 02:01 |
| 78 | | 28 | Caja Rural | + 02:02 |
| 79 | | 20 | | + 02:03 |
| 80 | | 22 | Caja Rural | + 02:04 |
| 81 | | 31 | Miche | " |
| 82 | | 33 | Andalucia Caja Granada | " |
| 83 | | 24 | EPM - UNE | + 02:06 |
| 84 | | 27 | LA - Antarte | + 02:07 |
| 85 | | 29 | | " |
| 86 | | 31 | UnitedHealthcare Pro Cycling | " |
| 87 | | 31 | Caja Rural | + 02:09 |
| 88 | | 21 | Orbea Continental | " |
| 89 | | 29 | Andalucia Caja Granada | + 02:11 |
| 90 | | 28 | EPM - UNE | + 02:12 |
| 91 | | 32 | UnitedHealthcare Pro Cycling | + 02:20 |
| 92 | | 22 | Orbea Continental | " |
| 93 | | | | + 02:21 |
| 94 | | | | + 02:23 |
| 95 | | 24 | Euskaltel - Euskadi | + 02:27 |
| 96 | | 22 | Burgos 2016 - Castilla y Leon | + 02:34 |
| 97 | | 33 | UnitedHealthcare Pro Cycling | + 02:36 |
| 98 | | 34 | LA - Antarte | + 02:37 |
| 99 | | 25 | Onda | + 02:43 |
| 100 | | 28 | Burgos 2016 - Castilla y Leon | + 02:46 |
| 101 | | 21 | Orbea Continental | + 02:47 |
| 102 | | 23 | | + 02:58 |
| 103 | | 30 | Barbot - Efapel | + 02:59 |
| 104 | | 25 | LA - Antarte | + 03:00 |
| 105 | | 22 | Burgos 2016 - Castilla y Leon | + 03:13 |
| 106 | | 26 | Caja Rural | + 03:19 |
| 107 | | 25 | Barbot - Efapel | + 03:23 |
| 108 | | 23 | Burgos 2016 - Castilla y Leon | + 03:25 |
| 109 | | 28 | Onda | + 03:27 |
| 110 | | 26 | UnitedHealthcare Pro Cycling | + 03:33 |
| 111 | | 29 | LA - Antarte | + 03:34 |
| 112 | | 31 | Burgos 2016 - Castilla y Leon | + 03:36 |
| DNS | | 26 | Euskaltel - Euskadi | |