| 1 | | 33 | Discovery Channel | 04:33:33 |
| 2 | | 29 | Discovery Channel | + 38 |
| 3 | | 28 | Colavita / Sutter Home Presented by COoking Light | + 01:00 |
| 4 | | 32 | Health Net Presented by Maxxis | + 01:06 |
| 5 | | 35 | Saunier Duval | + 01:19 |
| 6 | | 34 | BMC Racing Team | + 01:25 |
| 7 | | 26 | Health Net Presented by Maxxis | + 01:29 |
| 8 | | 21 | Discovery Channel | + 01:30 |
| 9 | | 30 | Team CSC | + 01:38 |
| 10 | | 23 | Discovery Channel | " |
| 11 | | 30 | Navigators Insurance Cycling Team | + 02:07 |
| 12 | | 33 | Team CSC | + 02:17 |
| 13 | | 32 | Saunier Duval | + 02:20 |
| 14 | | 31 | Quick Step - Innergetic | + 02:26 |
| 15 | | 20 | Quick Step - Innergetic | + 02:28 |
| 16 | | 26 | Navigators Insurance Cycling Team | + 02:32 |
| 17 | | 30 | BMC Racing Team | + 02:46 |
| 18 | | 40 | BMC Racing Team | " |
| 19 | | 28 | Team CSC | + 02:52 |
| 20 | | 25 | Quick Step - Innergetic | + 03:03 |