| 1 | - | | 24 | Brioches La Boulangère | 19:19:47 |
| 2 | - | | 35 | Chocolade Jacques - Wincor Nixdorf | + 03 |
| 3 | - | | 31 | US Postal Service Presented by Berry Floor | + 18 |
| 4 | (1) | | 29 | US Postal Service Presented by Berry Floor | + 28 |
| 5 | (3) | | 29 | Lotto - Domo | + 30 |
| 6 | (1) | | 21 | US Postal Service Presented by Berry Floor | + 31 |
| 7 | (3) | | 35 | Lampre | + 33 |
| 8 | (6) | | 23 | Rabobank | + 46 |
| 9 | - | | 24 | Lampre | + 47 |
| 10 | (2) | | 23 | Quick Step - Davitamon | + 51 |
| 11 | (6) | | 27 | Lampre | + 55 |
| 12 | (9) | | 34 | Lotto - Domo | + 58 |
| 13 | (17) | | 27 | Cofidis | " |
| 14 | (13) | | 23 | Landbouwkrediet - Colnago | + 01:01 |
| 15 | (2) | | 30 | Chocolade Jacques - Wincor Nixdorf | + 01:05 |
| 16 | (13) | | 21 | Relax - Bodysol | + 01:07 |
| 17 | (6) | | 21 | Rabobank | + 01:14 |
| 18 | (8) | | 27 | Vlaanderen - T-Interim | + 01:19 |
| 19 | (4) | | 24 | US Postal Service Presented by Berry Floor | + 01:32 |
| 20 | (2) | | 23 | Quick Step - Davitamon | " |
| 21 | (10) | | 38 | Chocolade Jacques - Wincor Nixdorf | + 01:41 |
| 22 | (23) | | 35 | Cofidis | + 02:04 |
| 23 | (18) | | 25 | Lampre | + 02:18 |
| 24 | (27) | | 28 | Lampre | + 03:56 |
| 25 | (14) | | 24 | Brioches La Boulangère | + 04:13 |
| 26 | (9) | | 27 | Quick Step - Davitamon | + 04:50 |
| 27 | (27) | | 31 | Lotto - Domo | + 05:22 |
| 28 | (29) | | 30 | Cofidis | + 06:13 |
| 29 | (13) | | 22 | Jong Vlaanderen 2016 | + 11:18 |
| 30 | (8) | | 23 | Vlaanderen - T-Interim | + 13:09 |
| 31 | (41) | | 21 | Landbouwkrediet - Colnago | + 19:33 |
| 32 | (41) | | 23 | Relax - Bodysol | + 19:36 |
| 33 | (48) | | 30 | Cofidis | + 21:08 |
| 34 | (45) | | 25 | Cofidis | + 23:35 |
| 35 | (56) | | 26 | MrBookmaker - Palmans | + 28:54 |
| 36 | (49) | | 29 | Ag2r Prevoyance | + 31:56 |
| 37 | (57) | | 20 | Lampre | + 34:08 |
| 38 | (49) | | 25 | Bankgiroloterij | + 34:55 |
| 39 | (50) | | 22 | Relax - Bodysol | + 36:19 |